You want the version that actually works with your status of fiji. Most of the time you do not want to have the newest coolest version of the submodule.
#Create submodule git update#
What is the difference between calling git supmodule update from the fiji directory and changing into a submodule directory and doing a git pull? After doing all of this, I realized in my case that it was more appropriate to use npm to manage my own dependencies instead.
This is probably the opposite way round from what you expect from resolving conflicts while merging :) Difference between git submodule update and git pull Create a submodule fromThe top-level repository specifies which submodules it wants to include, and which version of each. This can be a useful way to include libraries or other external dependencies into your main project. git folder of its own, and then OP is trying to push from the parent folder, that will not work.
Also, if you have some submodule, please make sure it's listed as registered under Preferences. yes it is modified, but if that subfolder is also being tracked by git, as in it has a. git diff -ours shows the differences between the “master” or “upstream” branch and the working tree. Using git submodules, one Git repository can include other Git repositories as subdirectories1. If you mean that you've created a folder in a folder and you would like to run 'git init' in this folder, then you can press Shift two times -> type 'Create Git repository' and choose desired folder.git diff -theirs shows the differences between the “server” branch and the working tree.If you’re using git diff -theirs and git diff -ours while rebasing then you may get confused. Now we should be able to continue, with git rebase -continue A note on “ours” and “theirs” The usual sequence of commands when working inside a submodule: See the Submodules section of the Downloading and Building Fiji From Source page for details. However, to work with a submodule you must clone that repository. Checking out submodulesĮach submodule is a proper full-fledged git repository, so any git commands executed within the folders of the submodule will affect that git repository, not fiji’s.
that 40-digit hex string which is the unique identifier of each commit) of that submodule. Submodules, although existing as folders inside the fiji repository, are different: only the folder name, as a path pointer, is registered as belonging to fiji’s git repository, together with the current revision (“commit name”, i.e. With git, any git command executed within any subdirectory of the repository affects the overall git repository. Submodules in Fijiįiji is hosted on a main git repository which contains several declared submodules such as TrakEM2. When in doubt, ask for help from the community. This section is out of date, potentially misleading or invalid.
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